1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtttggtttctgtttaatgcgattgcttctcgaatcctgaagtccatttacattactcgcataactcattctttttattattctggctgttgttttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGCTGCACAGATGTTCGTTCCCTGACAATGAACGATTTCAAGGCTGCCCATG
species | Arabidopsis thaliana |
transcript | AT4G02480.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAG GAGAAAACTGCAGCTCAGGCTGATAACCGTCCCACACCGEST: gi|164127090|gb|EL988870.1|EL988870
genomic: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAGgtttggtttc ... ttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCG
EST: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAG GAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCEST: gi|86063353|gb|DR359110.1|DR359110
genomic: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAGgtttggtttc ... ttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCC
EST: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAG GAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGCEST: gi|125027682|gb|EL099951.1|EL099951
genomic: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAGgtttggtttc ... ttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGC
EST: CTGGAGAAAGAAAAGAAG GAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGCEST: gi|86063355|gb|DR359112.1|DR359112
genomic: CTGGAGAAAGAAAAGAAGgtttggtttc ... ttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGC
EST: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAG GAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGC
genomic: TGACCGCAGCACATTTTCCAATCCGAGAAATACTGGAGAAAGAAAAGAAGgtttggtttc ... ttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGC
acattactcgcataactcattctttttattattctggctgttgttttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGCTGCACAGATGTTCGTTCCCTGACAATGAACGATTTCAAGGCTGCCCATG
ttttgac putative branch site (score: 3)
ttgtttt CT-rich tract
ataactcattcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtttctgtttaatgcgattgcttctcgaatcctgaagtccatttacattactcgcataactcattctttttattattctggctgttgttttgactacagGAGAAAACTGCAGCTCAGGCTGAGAACCGTCCCACACCGCCATTGTATAGCTGCACAGATGTTCGTTCCCTGACAATGAACGATTTCAAGGCTGCCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG