1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaaaataatgcaatattttcatgtataaggttgtattcttttgatttgatttctttaggtggttaatgcttttctggtttttaatctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCTTCATCGACGAAGAAGCGGAAGCACCTGTCGATGAGATGAGATTATGTGT
species | Arabidopsis thaliana |
transcript | AT3G06400.3 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAG AGTGCAACACCATCAAAGCGACCTT-AGGAAGACAAGCAAGTGAGAGTCCTEST: gi|116481379|gb|EG523971.1|EG523971
genomic: GAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAGgtaaaataat ... atctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCT
EST: AGTTTGATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAG AGTGCAGCACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCTEST: gi|124854501|gb|EH938938.1|EH938938
genomic: AGTTTGATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAGgtaaaataat ... atctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCT
EST: AGAAGAAGCTCGCGAAG AGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGEST: gi|116436611|gb|EG479203.1|EG479203
genomic: AGAAGAAGCTCGCGAAGgtaaaataat ... atctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAG
EST: AGTTTGATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAG AGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCTEST: gi|125095239|gb|EL152452.1|EL152452
genomic: AGTTTGATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAGgtaaaataat ... atctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCT
EST: GTTTGATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAG AGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCT
genomic: GTTTGATGAAAGAGAGAGGCAAGCCCGCAAAGAGAAGAAGCTCGCGAAGgtaaaataat ... atctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCT
ttttgatttgatttctttaggtggttaatgcttttctggtttttaatctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCTTCATCGACGAAGAAGCGGAAGCACCTGTCGATGAGATGAGATTATGTGT
ttttaat putative branch site (score: 3)
tcttt CT-rich tract
tttttaatctttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaataatgcaatattttcatgtataaggttgtattcttttgatttgatttctttaggtggttaatgcttttctggtttttaatctttgaagAGTGCAACACCATCAAAGCGACCTTTAGGAAGACAAGCAAGTGAGAGTCCTTCATCGACGAAGAAGCGGAAGCACCTGTCGATGAGATGAGATTATGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG