1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaacaaactcttgtttccataacaatcgatatcgatttcatcacgtgcgggtctcctctttaaaacatgttctttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCAAAACTCTCAGCGACCTCACGAGAAGAAAGCAATAGAGGTTCCATCTCTT
species | Arabidopsis thaliana |
transcript | AT3G61480.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAG TCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGAEST: gi|164024372|gb|ES147641.1|ES147641
genomic: TTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaact ... tttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGA
EST: GATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAG TCTCACTTGGCTTTCGCTCAGTACCAEST: gi|19741419|gb|AU226772.1|AU226772
genomic: GATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaact ... tttgtttcagTCTCACTTGGCTTTCGCTCAGTACCA
EST: TTTTCCGGTATGATCTACGTTTGTG-AAAGCATATAGCGTGACATTAGAG TCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCC
genomic: TTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaact ... tttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCA
gatatcgatttcatcacgtgcgggtctcctctttaaaacatgttctttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCAAAACTCTCAGCGACCTCACGAGAAGAAAGCAATAGAGGTTCCATCTCTT
ttctttgtttc CT-rich tract
tttaaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaactcttgtttccataacaatcgatatcgatttcatcacgtgcgggtctcctctttaaaacatgttctttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCAAAACTCTCAGCGACCTCACGAGAAGAAAGCAATAGAGGTTCCATCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA