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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcgcattttatccgattattcttttcattttcctctcggaactactggtgacttactccttcccgacttgtttttagAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAGATTCTAAGTACGTGCTCTTCTTCAATTCCAGCATAGTCTCTGAACTCAC

Basic information

species Arabidopsis thaliana
transcript AT5G65950.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396088|gb|EG438680.1|EG438680
EST:     TCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCCCACG                         AGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAG
genomic: TCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCCCACGgtagcgcatt ... ttgtttttagAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAG
EST: gi|116416782|gb|EG459374.1|EG459374
EST:     TCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCCCACG                         AGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAG
genomic: TCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCCCACGgtagcgcatt ... ttgtttttagAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAG
EST: gi|116396089|gb|EG438681.1|EG438681
EST:     TCCCAAAAACATCAAACTGGTGGTTGTCGGGGTCCAGTCTTCTCCCCACG                         AGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGG
genomic: TCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCCCACGgtagcgcatt ... ttgtttttagAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattttcctctcggaactactggtgacttactccttcccgacttgtttttagAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAGATTCTAAGTACGTGCTCTTCTTCAATTCCAGCATAGTCTCTGAACTCAC
                           gacttac  putative branch site (score: 2)
                                 ctccttcccgactt  CT-rich tract
                                             ttgttttta  TA-rich tract