1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaataaggaactcttatcttagcttgtaattgctttagaaattttgtcaaaaggggtgttaagtttgatatgtagagttttgtgactgtttttgtctttaaaagGTCGAGATAGGGATGATCAAGGAAAGCCAG
species | Arabidopsis thaliana |
transcript | AT5G64960.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGAAAGGGATTGTTACTTCTCCAG GTCGAGATAGGGATGATCAAGGAAAGCCAGEST: gi|124955909|gb|EL030882.1|EL030882
genomic: TTTGAAAGAGATTGTTACTTCTCCAGgtaataagga ... tctttaaaagGTCGAGATAGGGATGATCAAGGAAAGCCAG
EST: GCTGCATCATGAAAATGTCATCCATTTGAAAGAGATTGTTACTTCTCCAG GTCGAGATAGGGATGATCAAGGEST: gi|86059279|gb|DR355036.1|DR355036
genomic: GCTGCATCATGAAAATGTCATCCATTTGAAAGAGATTGTTACTTCTCCAGgtaataagga ... tctttaaaagGTCGAGATAGGGATGATCAAGG
EST: GCTGCATCATGAAAATGTCATCCATTTGAAAGAGATTGTTACTTCTCCAG GTCGAGATAGGGATGATCAAGGAAAGCCAGEST: gi|163996634|gb|ES052000.1|ES052000
genomic: GCTGCATCATGAAAATGTCATCCATTTGAAAGAGATTGTTACTTCTCCAGgtaataagga ... tctttaaaagGTCGAGATAGGGATGATCAAGGAAAGCCAG
EST: AAAGAGATTGTTACTTCTCCAG GTCGAGATAGGGATGATCAAGGAAAGCCAG
genomic: AAAGAGATTGTTACTTCTCCAGgtaataagga ... tctttaaaagGTCGAGATAGGGATGATCAAGGAAAGCCAG
aaaggggtgttaagtttgatatgtagagttttgtgactgtttttgtctttaaaagGTCGAGATAGGGATGATCAAGGAAAGCCAG
gtttgat putative branch site (score: 5)
ctgtttttgtcttt putative PPT
tttttgtctttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaggaactcttatcttagcttgtaattgctttagaaattttgtcaaaaggggtgttaagtttgatatgtagagttttgtgactgtttttgtctttaaaagGTCGAGATAGGGATGATCAAGGAAAGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA