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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcaactttttgcctttaatatagcttttccagttttaatttaccgaaactgacaaatgtcttgatttcagACTGGAATAAGATGAGAGTCTCAGTGAACATCATCACCCAAAACCGAGCTCAATCTTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGG

Basic information

species Arabidopsis thaliana
transcript AT5G60700.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60700.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA11G20460.1 (Glycine max), 3'ss of exon 2
------------------gtaagtatcaactttttgcctttaatatagcttttccagttttaatttac-----cgaaactgacaaatgtcttgatttcagACTGGAATAAGATGAGAGTCTCAGTGAACATCATCACCCAAAACCGAGCTCAATCTTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGG
                   | | ||  || |  |||    |   | | ||||| || |   |||  |        ||||| |  ||  | |   || |||||||||||  |||||| || || ||||||||||||||||||||  ||||  | ||  ||  |||  | || |  ||| | |||||||| ||||| || ||
tttattgacttttataagattattactaattgattgatgatgtaaaaacttttacactgacaatacatgtatgttaaactcatcaaattttgtcttgcagACTGGAATCGGATGAGGGTTTCTGTGAACATCATCACCCAAAATAGAGCCAATTCACTAGCAAGGCTTCTCAAATCTCTCAGCAATGCCTACTATCTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatagcttttccagttttaatttaccgaaactgacaaatgtcttgatttcagACTGGAATAAGATGAGAGTCTCAGTGAACATCATCACCCAAAACCGAGCTCAATCTTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGG
               agttttaattta  TA-rich tract