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gtatgagacttttttactccttttatttgtttcagtgcgattacgattttgagatttttacttgggagatttttaggttcggattttgttttctgattttcgaaatttggtttttgatcagACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAG
species | Arabidopsis thaliana |
transcript | AT5G50850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG ACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGEST: gi|164215085|gb|EL970209.1|EL970209
genomic: AATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGgtatgagact ... ttttgatcagACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAG
EST: AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG ACTCTTAGGAGGACGCGATTCGEST: gi|116443796|gb|EG486388.1|EG486388
genomic: AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGgtatgagact ... ttttgatcagACTCTTAGGAGGACGCGATTCG
EST: AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG ACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTEST: gi|116376958|gb|EG419550.1|EG419550
genomic: AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGgtatgagact ... ttttgatcagACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCT
EST: AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCG ACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCT
genomic: AGAGAATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGgtatgagact ... ttttgatcagACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCT
agatttttaggttcggattttgttttctgattttcgaaatttggtttttgatcagACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAG
ttctgat putative branch site (score: 3)
ttttt putative PPT
attttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagacttttttactccttttatttgtttcagtgcgattacgattttgagatttttacttgggagatttttaggttcggattttgttttctgattttcgaaatttggtttttgatcagACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG