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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatatagagatcactttctctgtttgttagttcatgtttatgttaacaagaatgtgttgttggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGAAAGCCATGCTAGATGAGTACTATGTGGGTGATATTGACACAGCTACTGT

Basic information

species Arabidopsis thaliana
transcript AT5G48810.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124795386|gb|EH885065.1|EH885065
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGGA
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGA
EST: gi|86078422|gb|DR374179.1|DR374179
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
EST: gi|125094028|gb|EL151567.1|EL151567
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGG
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGG
EST: gi|164196750|gb|ES041580.1|ES041580
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGGACA
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACA
EST: gi|124788973|gb|EH878652.1|EH878652
EST:     TTCTTGGATGATCATCCTGGTGGTGATGAGGTTAATCTTGACTTCTACAG                         GGAAAGATGCG
genomic: TTCTTGGATGATCATCCTGGTGGTGATGAGGTTA-TCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCG
EST: gi|164098302|gb|ES095187.1|ES095187
EST:     GATGAGGTTATCTTGACTTCTACAG                         GG-AAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
genomic: GATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
EST: gi|125188684|gb|EL203638.1|EL203638
EST:     GATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGAATGCGACCGATGATTTCGAGGATGTGGGACATA
genomic: GATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGA-TGCGACCGATGATTTCGAGGATGTGGGACATA
EST: gi|125145672|gb|EL180869.1|EL180869
EST:     TGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
genomic: TGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
EST: gi|163973388|gb|ES025168.1|ES025168
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGGATGCGACCGAT
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAG-ATGCGACCGAT
EST: gi|86081290|gb|DR377047.1|DR377047
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
EST: gi|164068641|gb|ES005190.1|ES005190
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGA
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGA
EST: gi|86074468|gb|DR370225.1|DR370225
EST:     GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAG                         GGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA
genomic: GTTCTTGGATGATCATCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGgtaacatata ... tggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctgtttgttagttcatgtttatgttaacaagaatgtgttgttggtattcagGGAAAGATGCGACCGATGATTTCGAGGATGTGGGACATAGTTCGACTGCGAAAGCCATGCTAGATGAGTACTATGTGGGTGATATTGACACAGCTACTGT
                         tgttaac  putative branch site (score: 2)
                     tttatgttaa  TA-rich tract