Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcttttaaatcacccattcttttgtgctcagtgattgtttttttattttattgtgctgatgttgttgcttcttattgtgagtaccagCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G45170.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125092730|gb|EL150553.1|EL150553
EST:     GTTCAATGTAG                         CTTTTCAAAAGACTTGGGCTAGTATTGTGCAAATTGGCCTGAACCAGTTTA
genomic: GTTCAATGTAGgtgcggcttt ... tgagtaccagCTTTTCAAAAG-CTTGGGCTAG-ATTGTGCAAATTGGCCTGAACCAGTTTA
EST: gi|116478591|gb|EG521183.1|EG521183
EST:     GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAG                         CTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT
genomic: GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAGgtgcggcttt ... tgagtaccagCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT
EST: gi|125068027|gb|EL134319.1|EL134319
EST:     CGCCAAGCGTTCAATGTAG                         CTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT
genomic: CGCCAAGCGTTCAATGTAGgtgcggcttt ... tgagtaccagCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT
EST: gi|116478590|gb|EG521182.1|EG521182
EST:     GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAG                         CTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT
genomic: GGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAGgtgcggcttt ... tgagtaccagCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT
EST: gi|124842160|gb|EH926597.1|EH926597
EST:     TGGTCAAGTAATCGCCAAGCGTTCAATGTAG                         CTTTTCAAAAGCTTGGGCTAGATTGTGCGAATTGGCCTGAACCAGTTTATT
genomic: TGGTCAAGTAATCGCCAAGCGTTCAATGTAGgtgcggcttt ... tgagtaccagCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtttttttattttattgtgctgatgttgttgcttcttattgtgagtaccagCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAG
                     tgctgat  putative branch site (score: 3)
     tttttttattttattg  TA-rich tract