1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtagaaatttcatcagaggttttagtcgataaatagtattctcgaacaaatctaatcttacgcgtttcacttcttgttttctttggatttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC
species | Arabidopsis thaliana |
transcript | AT5G37680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCT ACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGEST: gi|86024177|gb|DR319930.1|DR319930
genomic: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCTgtgagtagaa ... atttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGG
EST: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCT ACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGEST: gi|86024174|gb|DR319927.1|DR319927
genomic: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCTgtgagtagaa ... atttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGG
EST: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCT ACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGEST: gi|86024176|gb|DR319929.1|DR319929
genomic: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCTgtgagtagaa ... atttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGG
EST: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCT ACTGGAGGTTACAGTGAAGATATGATACCAAACTGTAGGATTTAACATGAG
genomic: TCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCTgtgagtagaa ... atttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAA-CTGTAGGATTTAACATGAG
tcgaacaaatctaatcttacgcgtttcacttcttgttttctttggatttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC
atcttac putative branch site (score: 3)
aaatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagaaatttcatcagaggttttagtcgataaatagtattctcgaacaaatctaatcttacgcgtttcacttcttgttttctttggatttgtcaagACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG