1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttttcatgacttggaactaaatttaagctagattcttgtcttgttatttatagtattggcaattttttggtgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA
species | Arabidopsis thaliana |
transcript | AT5G03630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAEST: gi|124859665|gb|EH944102.1|EH944102
genomic: TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
EST: TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAEST: gi|124886509|gb|EH965411.1|EH965411
genomic: TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
EST: TGAACTTGCTATCATTTCCAGGGAACAA GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAEST: gi|124969885|gb|EL043753.1|EL043753
genomic: TGAACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
EST: AACTTGCTATCATTTCCAGGGAACAA GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
genomic: AACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
agctagattcttgtcttgttatttatagtattggcaattttttggtgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA
ttgttatttatagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttcatgacttggaactaaatttaagctagattcttgtcttgttatttatagtattggcaattttttggtgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG