1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcattctctcgtatgcttttaagtaatatggaaatcttaactcttttagtaatgttgcataatggtgttctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTGCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTC
species | Arabidopsis thaliana |
transcript | AT4G27720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACA GGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTGEST: gi|124821348|gb|EH906214.1|EH906214
genomic: GGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACAgtgagcattc ... tctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTG
EST: GGGTCTCTAGCCGACAAACA GGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGEST: gi|125193465|gb|EL208419.1|EL208419
genomic: GGGTCTCTAGCCGACAAACAgtgagcattc ... tctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAG
EST: GGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACA GGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTGEST: gi|124796376|gb|EH886055.1|EH886055
genomic: GGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACAgtgagcattc ... tctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTG
EST: GGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACA GGGTCGTAAGAGGGCATGTGTTACCTATTGTAT
genomic: GGTTCCTCTATGTTGTTTGGTACCATCGTTGGGTCTCTAGCCGACAAACAgtgagcattc ... tctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTAT
taatatggaaatcttaactcttttagtaatgttgcataatggtgttctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTGCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTC
tcttaac putative branch site (score: 2)
ttttagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcattctctcgtatgcttttaagtaatatggaaatcttaactcttttagtaatgttgcataatggtgttctgtatcagGGGTCGTAAGAGGGCATGTGTTACCTATTGTATTACCTATATATTGAGCTGCATCACCAAGCATTCTCCTCAATATAAGGTTTTGATGGTAGGCCGTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC