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gtatagctcaaaccttattattacctctcaatttgttttattgcattctttagattctgaatattctgaatttctgtttcctcagCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCTGATGTTGTTGAG
species | Arabidopsis thaliana |
transcript | AT4G21660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGATAATCAGAACAAAGAGAAAGGCATCTCTAATAAGAAGAAAAAG CTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCTEST: gi|86070989|gb|DR366746.1|DR366746
genomic: AGCAGGATAATCAGAACAAAGAGAAAGGCATCTCTAATAAGAAGAAAAAGgtatagctca ... gtttcctcagCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCT
EST: AGCAGGATAATCAGAACAAAGAGAAAGGCATCTCTAATAAGAAGAAAAAG CTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAEST: gi|125242052|gb|EL256137.1|EL256137
genomic: AGCAGGATAATCAGAACAAAGAGAAAGGCATCTCTAATAAGAAGAAAAAGgtatagctca ... gtttcctcagCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTA
EST: AAGAAGAAAAAG CTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCT
genomic: AAGAAGAAAAAGgtatagctca ... gtttcctcagCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCT
atttgttttattgcattctttagattctgaatattctgaatttctgtttcctcagCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCTGATGTTGTTGAG
tttctgtttcctc CT-rich tract
aatattctgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagctcaaaccttattattacctctcaatttgttttattgcattctttagattctgaatattctgaatttctgtttcctcagCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCCGCTAGGCCTGATGTTGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC