1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctagttatgaaaacaatgccttttttgttttcactcttgtcaaatctagtttgcaataacgcttgcctgagatgtaagttggtaataatatcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTG
species | Arabidopsis thaliana |
transcript | AT4G14455.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGA GTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACEST: gi|86064864|gb|DR360621.1|DR360621
genomic: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAgtatgtttct ... atcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGAC
EST: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGA GTGACTGGAGACATACATGAAGAAGTTAAGAATCATAACCGCTTGCTTGACEST: gi|86064865|gb|DR360622.1|DR360622
genomic: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAgtatgtttct ... atcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGAC
EST: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGA GTGACTGGAGACATACATGAAGAAGTTAAGAATCATAACCGCTTGCTTGACEST: gi|86086356|gb|DR382115.1|DR382115
genomic: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAgtatgtttct ... atcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGAC
EST: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGA GTGACTGGAGACATACATGAAGAAGTTAAGAATCATAACCGCTTGCTTGACEST: gi|163994144|gb|ES110604.1|ES110604
genomic: ATGATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAgtatgtttct ... atcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGAC
EST: GATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGA GTGACTGGAGACATACATGAAGAAGTTAAGA-TCATAACCGCTTGCTTGAC
genomic: GATGAAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAgtatgtttct ... atcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGAC
tctagtttgcaataacgcttgcctgagatgtaagttggtaataatatcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTG
caataac putative branch site (score: 2)
tcttatc putative PPT
taataatatcttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagttatgaaaacaatgccttttttgttttcactcttgtcaaatctagtttgcaataacgcttgcctgagatgtaagttggtaataatatcttatcagGTGACTGGAGACATACATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - tcaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - caataac