1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaatttgcaatcttgagagataattttttttcctttttttggtttgattctggagataaagcttggtcttttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTTGTTACCAGCGTTGTCTTCATCTGCGAAGACTAAATCAAAGAGTCCTTAT
species | Arabidopsis thaliana |
transcript | AT3G60370.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGACCCAAAAGACCAATG CTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTTEST: gi|124866414|gb|EH950851.1|EH950851
genomic: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATGgtaaaatttg ... ttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTT
EST: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATG CTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCEST: gi|86070976|gb|DR366733.1|DR366733
genomic: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATGgtaaaatttg ... ttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTC
EST: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGACCCAAAAGACCAATG CTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTTEST: gi|19875360|gb|AU236191.1|AU236191
genomic: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATGgtaaaatttg ... ttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTT
EST: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATG CTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTT
genomic: AGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATGgtaaaatttg ... ttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTT
ttttttcctttttttggtttgattctggagataaagcttggtcttttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTTGTTACCAGCGTTGTCTTCATCTGCGAAGACTAAATCAAAGAGTCCTTAT
ttttaat putative branch site (score: 3)
tctttt CT-rich tract
tcttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatttgcaatcttgagagataattttttttcctttttttggtttgattctggagataaagcttggtcttttaattgcagCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTTGTTACCAGCGTTGTCTTCATCTGCGAAGACTAAATCAAAGAGTCCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA