1 5' 3' | 2 5' 3' | 3 5' 3' |
...ataagatattaatagacatgacaacgtcactaacacctaaaacatggctcatgattttagttgaagtgtgactaataaatatatatattccaatttgcagGTTTCAGCTTGTAAAAATGTGTTTCCCAGATATCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTAGCTATATTCGAAGTCAATCGTCACATGTACA
species | Arabidopsis thaliana |
transcript | AT3G55880.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAGACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCC GTTTCAGCTTGTAAAAATGTGTTTCCCAGATATEST: gi|86074507|gb|DR370264.1|DR370264
genomic: GAGAGACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCgtaagttcac ... caatttgcagGTTTCAGCTTGTAAAAATGTGTTTCCCAGATAT
EST: GTTGTAGAGAGAGACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCC GTTTCAGCTTGTAAAAATGTGTTTCCCAGATATCAAAAAATCCTCCAACAA
genomic: GTTGTAGAGAGAGACGAAAGCTCCTAGTCTTCAAAATCGACATCGAATCCgtaagttcac ... caatttgcagGTTTCAGCTTGTAAAAATGTGTTTCCCAGATATCAAAAAATCCTCCAACAA
ggctcatgattttagttgaagtgtgactaataaatatatatattccaatttgcagGTTTCAGCTTGTAAAAATGTGTTTCCCAGATATCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTAGCTATATTCGAAGTCAATCGTCACATGTACA
gactaat putative branch site (score: 2)
tgactaataaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagatattaatagacatgacaacgtcactaacacctaaaacatggctcatgattttagttgaagtgtgactaataaatatatatattccaatttgcagGTTTCAGCTTGTAAAAATGTGTTTCCCAGATATCAAAAAATCCTCCAACAAGAGAGACTCAAATAGCTAGCTATATTCGAAGTCAATCGTCACATGTACA
- - - - - - - - -atgacaa
- - - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - ctaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaat