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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctctttatttgtgctcgattctgattctttttgtgcaaatctagtaagaattttctggttgtttgtgcagAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAGTTAGTGACTGATTTGCAGAGTGAGATTATCGAT

Basic information

species Arabidopsis thaliana
transcript AT3G53970.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439792|gb|EG482384.1|EG482384
EST:     GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAA                         AGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTT
genomic: GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAgtaagtttct ... gtttgtgcagAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTT
EST: gi|124940323|gb|EL016784.1|EL016784
EST:     GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAA                         AGTTGGGGATTATGCTGAGGAAAGCAATGAGGGG-ATTA
genomic: GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAgtaagtttct ... gtttgtgcagAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgattctgattctttttgtgcaaatctagtaagaattttctggttgtttgtgcagAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAGTTAGTGACTGATTTGCAGAGTGAGATTATCGAT
   ttctgat  putative branch site (score: 3)
                             taagaatttt  TA-rich tract