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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttctcaattcggcgtttgttccttttgtgaagtctttgtttcaatgatttggtgtttgattcttaaatttatgtgtgaagGACTGTTTTGGACGTCCCATTTCAAGTGCACCTGATGCTTGGATTGATGTGGTTGAGAGAGTCTCTGACGATAACAACAAGACGTTAAA

Basic information

species Arabidopsis thaliana
transcript AT3G48780.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069043|gb|DR364800.1|DR364800
EST:     GCTTGGCGCATGAGGATTTCTACATCCGACGATTGTATCATCGGATTCAG                         GACTGTTTTGGACGTCCCATATCAAGTGCACCTGATGCTTGGATTGATGTG
genomic: GCTTGGCGCATGAGGATTTCTACATCCGACGATTGTATCATCGGATTCAGgtaccttctc ... atgtgtgaagGACTGTTTTGGACGTCCCATTTCAAGTGCACCTGATGCTTGGATTGATGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaagtctttgtttcaatgatttggtgtttgattcttaaatttatgtgtgaagGACTGTTTTGGACGTCCCATTTCAAGTGCACCTGATGCTTGGATTGATGTGGTTGAGAGAGTCTCTGACGATAACAACAAGACGTTAAA
                            gtttgat  putative branch site (score: 5)
                             tttgattcttaaattt  TA-rich tract