1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacgaaaatgattatcttctcaggcttccatgaacatagcatactcgttttattactcgttttattaaatgcgttgatctttaacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCT
species | Arabidopsis thaliana |
transcript | AT3G44880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAG GTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAGEST: gi|116476111|gb|EG518703.1|EG518703
genomic: TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
EST: TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAG GTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAGEST: gi|125080641|gb|EL142168.1|EL142168
genomic: TGGCCTGATGAAAATGGTTGGGATAGAGCCAATTCAATTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
EST: GCCTGATGAAAATGGTTGGGATAGTTAGCCAATTCAATTGAACCCCCTAG GTTGCCGGATGATTTCGATAAACCGGAEST: gi|124781718|gb|EH871661.1|EH871661
genomic: GCCTGATGAAAATGGTTGGGATAG--AGCCAATTCAATTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGA
EST: TTGAACCCCCTAG GTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
genomic: TTGAACCCCCTAGgtaacgaaaa ... aacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAG
agcatactcgttttattactcgttttattaaatgcgttgatctttaacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCT
ctttaac putative branch site (score: 3)
ttttattactcgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgaaaatgattatcttctcaggcttccatgaacatagcatactcgttttattactcgttttattaaatgcgttgatctttaacataaaagGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAATTCAAAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA