1 5' 3' | 2 5' 3' |
...ttgaaatcatcgtttctttttttgttctctttacctatgtatgctgtgagtaaagcagtgattttcatggccttgacacatttcactattgtggctacagGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTTGCAGCCATTCCCTCTTACTGAACTCAAGTAACTGGAGAAGT
species | Arabidopsis thaliana |
transcript | AT3G29170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACTTGTTCTTGGGATCCTTACTTTTCTCCCTG GTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTEST: gi|164187015|gb|ES030345.1|ES030345
genomic: TTACTTGTTCTTGGGATCCTTACTTTTCTCCCTGgtaagagttc ... gtggctacagGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGT
EST: GGTTATGCGTTACTTGTTCTTGGGATCCTTACTTTTCTCCCTG GTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTEST: gi|125280695|gb|EL294780.1|EL294780
genomic: GGTTATGCGTTACTTGTTCTTGGGATCCTTACTTTTCTCCCTGgtaagagttc ... gtggctacagGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGT
EST: CTCTCAAGGTTATGCGTTACTTGTTCTTGGGATCCCTACTTTTCTCCCTG GTTTCTACGAGACCCGGATTGCTTACTACTCATGGAGAGGAG
genomic: CTCTCAAGGTTATGCGTTACTTGTTCTTGGGATCCTTACTTTTCTCCCTGgtaagagttc ... gtggctacagGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAG
gtgagtaaagcagtgattttcatggccttgacacatttcactattgtggctacagGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTTGCAGCCATTCCCTCTTACTGAACTCAAGTAACTGGAGAAGT
ccttgac putative branch site (score: 4)
attttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaaatcatcgtttctttttttgttctctttacctatgtatgctgtgagtaaagcagtgattttcatggccttgacacatttcactattgtggctacagGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTTGCAGCCATTCCCTCTTACTGAACTCAAGTAACTGGAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- gaaatca