1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactactgttttttcttatacaagcaccaactgtatttaacaccatacatagcatctgactttgttttgttttctgcatttcgctcttaagATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATCTCAATGACAAGAAT
species | Arabidopsis thaliana |
transcript | AT3G25690.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAACCATCAG ATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATCEST: gi|124707359|gb|EH798761.1|EH798761
genomic: CAAACCATCAGgtactactgt ... cgctcttaagATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATC
EST: TTAAACCCTCCAAACCAAGCAAACCATCAG ATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATCEST: gi|124951638|gb|EL026986.1|EL026986
genomic: TTAAACCCTCCAAACCAAGCAAACCATCAGgtactactgt ... cgctcttaagATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATC
EST: TACTGTTAAGCGGCTCAACGTTAAACCCTCCAAACCAAGCAAACCATCAG ATAATGGCGAAGGAGGCGACAAAGAACTAGTCTGTGGATCC
genomic: TACTGTTAAGCGGCTCAACGTTAAACCCTCCAAACCAAGCAAACCATCAGgtactactgt ... cgctcttaagATAATGGCGAAGGAGGCGACAAAGAAC-AGTCTGTGGATCC
ttaacaccatacatagcatctgactttgttttgttttctgcatttcgctcttaagATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATCTCAATGACAAGAAT
atctgac putative branch site (score: 3)
tttcgctctt putative PPT
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactactgttttttcttatacaagcaccaactgtatttaacaccatacatagcatctgactttgttttgttttctgcatttcgctcttaagATAATGGCGAAGGAGGCGACAAAGAACAGTCTGTGGATCCCGACTACAATCTCAATGACAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC