1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagagttttggtgatcacataagttctcttatactttgtagtgatcagtggatttgcaggtttatgttctgtttttcaaggaatctgagtatttgttttcattgtacttgtgtttggctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATGATTGAAA
species | Arabidopsis thaliana |
transcript | AT3G01480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAAGGGAAAAGTEST: gi|124803868|gb|EH892003.1|EH892003
genomic: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAA-GGGAAAAGT
EST: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAAEST: gi|124937782|gb|EL014489.1|EL014489
genomic: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAA
EST: ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTGEST: gi|124800448|gb|EH890113.1|EH890113
genomic: ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
EST: CTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTGEST: gi|125236853|gb|EL250938.1|EL250938
genomic: CTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
EST: TGATAGTCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGEST: gi|124710661|gb|EH802063.1|EH802063
genomic: TGATAG-CCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTG
EST: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTEST: gi|124866379|gb|EH950816.1|EH950816
genomic: CTGATAGCCTCAAGATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGT
EST: ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACAATTGCAGCAAGGGAAAAGTATAATTGTEST: gi|125213484|gb|EL228316.1|EL228316
genomic: ATTGCTGGCGTTAAGGCTCTAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACA-TTGCAGCAAGGGAAAAGTATAATTGT
EST: TAGATTCTGTTGAACGG AATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
genomic: TAGATTCTGTTGAACGGgtaaagagtt ... gctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTG
tttttcaaggaatctgagtatttgttttcattgtacttgtgtttggctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATGATTGAAA
tatttgttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagagttttggtgatcacataagttctcttatactttgtagtgatcagtggatttgcaggtttatgttctgtttttcaaggaatctgagtatttgttttcattgtacttgtgtttggctattgtagAATGTGAGGCAGGCAAGTAGAACATTGCAGCAAGGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATGATTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG