Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattccgtttgaagattctgtcttttaatttgttagtaatgtttagtttgttattcaacttgatgtgtcttatttttcatgctctagcagTTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAGGGGTTTGGTAATTATTCAGATTTTCCAACAGAACAAATGGATGGTTTAA

Basic information

species Arabidopsis thaliana
transcript AT2G43500.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116399533|gb|EG442125.1|EG442125
EST:     TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCC--T-T-T                         TTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAG
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcagTTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAG
EST: gi|116399826|gb|EG442418.1|EG442418
EST:     TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCC--T-T-T                         TTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAG
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcagTTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAG
EST: gi|116399535|gb|EG442127.1|EG442127
EST:     TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT                         C
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
EST: gi|116399535|gb|EG442127.1|EG442127
EST:     TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT                         C
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
EST: gi|116399535|gb|EG442127.1|EG442127
EST:     TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT                         C
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
EST: gi|116399535|gb|EG442127.1|EG442127
EST:     TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT                         C
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgtttagtttgttattcaacttgatgtgtcttatttttcatgctctagcagTTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAGGGGTTTGGTAATTATTCAGATTTTCCAACAGAACAAATGGATGGTTTAA
                      acttgat  putative branch site (score: 5)
      tttagtttgttatt  TA-rich tract