Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgtgattcttttggactctctactttggacaatgatgattgcaaatgtaatttcaactttttttttggattatagGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACTGTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTC
Basic information
species | Arabidopsis thaliana |
transcript | AT2G27810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 2
-------------gtaagtgtgattcttttggactctctactttggacaatgatgattg---caaatg--taatttcaact--ttttttttggattatagGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACTGTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTC
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ttaaaaagtttatacaaacaggacctaactgaatttttatttatttattttggtgaatttattaagtggttattcttatctgatgtgtgtgtgggtgtagGAGGATACTTGTTCGGTGATTTCGACTGTGCTCTTTGTATCTGGAGTGACTACACTGTTGCATACAAGTTTTGGGTCGAGGTTGCCCTTGATACAAGGGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125245678|gb|EL259763.1|EL259763EST: CATTGACTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT GAGGAGGTTGCAAATGTTGTATCGAC
genomic: CATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACATgtaagtgtga ... tggattatagGAGGAGGTTGCAAATGTTGTATCGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactttggacaatgatgattgcaaatgtaatttcaactttttttttggattatagGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACTGTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTC
tttcaacttttttttt CT-rich tract
taatttcaactttttt TA-rich tract