Sequence
atgc intronic sequence ATGC exonic sequence...ttgatccctgaagttctacttctgaaaatctttactgatatattgtgtataattgctagaaatcctcaattctctgaaactttgtttttgcaccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02570.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02570.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G40240.1 (Glycine max), 3'ss of exon 2
ttgatccctgaagttctacttctgaaaatctttactgatatattgtgtataattgctagaaatcctcaatt---ctctgaaactttgttt-----ttgcaccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCG
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------ttctaagttagatttttgtcattattt--tgctttatcgcgtcacacaataatacttgctttactgaactccaaatatgtgccctaaaattgtgttacacagGTCATTGCTTTGACTGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCCCTGCTCCTCCTAACGCTGCTGCTGCCTCTCCAACCTTGTCCATACATA
upper sequence: AT2G02570.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G00560.2 (Glycine max), 3'ss of exon 3
--------------------------------------ttgatccctgaagttctacttctgaaaat------ctttactgatatattgtgtataattgctagaaatcctcaattctctgaa---actttgtttttgcaccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCG------
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gtctgctctgtctcctgatgtccagcatgctttctcctcagagattctaagttagatttttgtcattattttgctttatcgtcgtctaacacaatactacttgctttactgaactccaaatatgtgccctaaaattgtgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCT------GCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATA
upper sequence: AT2G02570.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G00560.1 (Glycine max), 3'ss of exon 2
ttgatccctgaagttctacttctgaaaatctttactgatatattgtgtataattgctagaaatcctcaattctctgaa---actttgtttttgcaccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCG------
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-taagt--tagatttttgtcattattttgctttatcgtcgtctaacacaatactacttgctttactgaactccaaatatgtgccctaaaattgtgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCT------GCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19875566|gb|AU236397.1|AU236397EST: AGGATCCTAGGAACTCGGAATATGCAGACATGGAAAAGGAGCTTAAAGAG GTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATT
genomic: AGGATCCTAGGAACTCGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGgtgatcaatc ... caccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtataattgctagaaatcctcaattctctgaaactttgtttttgcaccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCG
tttttgc CT-rich tract
tttgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgatccctgaagttctacttctgaaaatctttactgatatattgtgtataattgctagaaatcctcaattctctgaaactttgtttttgcaccatatagGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - -gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctg