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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttaggacggtgaatttgctattttgtgttttggtttggtgtgatatcagaagttttggtttcttttttgtagGAAGCTCTTTGAAGAGTTTGATCCTTCAGCTATAGCACAATTCACAGAGAAGAGGTTGATGTCTCTTAGAGTTAATGGGTGTCTAATTCTATCCGAACAG

Basic information

species Arabidopsis thaliana
transcript AT1G75090.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087940|gb|DR383699.1|DR383699
EST:     TAGCTGGCCTTCAATCCTACGCAGAAGAGACGACTTTAG                         GAAACTCTTTGAAGAGTTTGATCCTTCAGCTATAGCAGAATTCACAGAGAA
genomic: TAGCTGGCCTTCAATCCTACGCAGAAGAGACGACTTTAGgtaaacttag ... ttttttgtagGAAGCTCTTTGAAGAGTTTGATCCTTCAGCTATAGCACAATTCACAGAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattttgtgttttggtttggtgtgatatcagaagttttggtttcttttttgtagGAAGCTCTTTGAAGAGTTTGATCCTTCAGCTATAGCACAATTCACAGAGAAGAGGTTGATGTCTCTTAGAGTTAATGGGTGTCTAATTCTATCCGAACAG
                                   ttttggtttctttttt  CT-rich tract
                                         tttctttttt  TA-rich tract