1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaactatcgaaaagttttcatggttttatctcaaaacgtttcaaaatgttttttttgcggttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAGAACCGGATATAGTGAAGCATTTTTTGCTTAAGACACTTCAGCTGCAAG
species | Arabidopsis thaliana |
transcript | AT1G35580.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125187566|gb|EL202520.1|EL202520
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|116454993|gb|EG497585.1|EG497585
genomic: CGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125176470|gb|EL195771.1|EL195771
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: AACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125282304|gb|EL296389.1|EL296389
genomic: AACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: ACTACCGATGAAGTCTTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|164219974|gb|EL992881.1|EL992881
genomic: ACTACCGATGAAGTC-TTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAAEST: gi|124798100|gb|EH887779.1|EH887779
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAA
EST: ACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|124873801|gb|EH955446.1|EH955446
genomic: ACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|116454994|gb|EG497586.1|EG497586
genomic: CTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125254486|gb|EL268571.1|EL268571
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: ACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125180479|gb|EL197422.1|EL197422
genomic: ACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGNTTTTGTACCGAGTGCGTTGGCGTTTEST: gi|124789737|gb|EH879416.1|EH879416
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTT
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGEST: gi|124814219|gb|EH899085.1|EH899085
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGG
EST: ATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125071502|gb|EL136529.1|EL136529
genomic: ATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: ACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|125260087|gb|EL274172.1|EL274172
genomic: ACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGEST: gi|125161396|gb|EL188535.1|EL188535
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAG
EST: ACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAEST: gi|116437905|gb|EG480497.1|EG480497
genomic: ACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
ttttcatggttttatctcaaaacgtttcaaaatgttttttttgcggttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAGAACCGGATATAGTGAAGCATTTTTTGCTTAAGACACTTCAGCTGCAAG
tttcaaaatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactatcgaaaagttttcatggttttatctcaaaacgtttcaaaatgttttttttgcggttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGAGAACCGGATATAGTGAAGCATTTTTTGCTTAAGACACTTCAGCTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC