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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctttctcttgatgtctttgtttactgtctctctatatcatgagttttgtaagttgttccattttatgctcagTGTACTTGAAGGGGCTGAATCAACTTTGGTAATGGCATCGGGGATGTATGCAAGTAATGTTATGCTTTTGGCTTTGGTTCCTACAAATGGACATATTGTG

Basic information

species Arabidopsis thaliana
transcript AT1G33320.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G33320.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 3
gtatatctttc-tcttgatg--tctttgtttactgtctctctatatcatgagttttg-taagttgttccattttat---gctcagTGTACTTGAAGGGGCTGAATCAACTTTGGTAATGGCATCGGGGATGTATGCAAGTAATGTTATGCTTTTGGCTTTGGTTCCTACAAATGGACATATTGTG
|| ||   | | |  | ||   | ||||||    |   |  | |      | ||||  | || |  | |  | | |   |  ||||| |||||| ||||||||||||||| || |||||||||| || |||| ||| ||||  |||||| |  |||| ||||||||  |   ||| ||||| |||
gtttacactccattctaatacttttttgttggtagaacccatttgatccaatttttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttactgtctctctatatcatgagttttgtaagttgttccattttatgctcagTGTACTTGAAGGGGCTGAATCAACTTTGGTAATGGCATCGGGGATGTATGCAAGTAATGTTATGCTTTTGGCTTTGGTTCCTACAAATGGACATATTGTG
                                      ttccatttt  CT-rich tract
                                          attttat  TA-rich tract