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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctctaatcatttaacactcattctcttgtctgttttcatcttatcaagaattgggtttatggtttgtaatgagttacattttacagATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCTCATTTTGATCCAGCTTTGATTCATCGTTGCTTGCCTGATGA

Basic information

species Arabidopsis thaliana
transcript AT1G21760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124867634|gb|EH952071.1|EH952071
EST:     CAATACTTTATTACAAAAAGGCCTTGGCTTG                         ATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCC
genomic: CAATACTTTATTACAAAAAGGCCTTGGCTTGgtacatctct ... cattttacagATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCC
EST: gi|19875109|gb|AU235940.1|AU235940
EST:     CTTGCGGCTCAGGACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTG                         ATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCC
genomic: CTTGCGGCTCAGGACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGgtacatctct ... cattttacagATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcatcttatcaagaattgggtttatggtttgtaatgagttacattttacagATCTTTATGGAGTCCATGTGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCTCATTTTGATCCAGCTTTGATTCATCGTTGCTTGCCTGATGA
                                          ttacatttta  TA-rich tract