1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatgttgagggacttgtagccctgctaatttttatgtttttgtttcattgttctgtttcttgtttagatttttagtctgcctgcctttgagaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAA
species | Arabidopsis thaliana |
transcript | AT1G17370.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTEST: gi|116486725|gb|EG529317.1|EG529317
genomic: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
EST: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTEST: gi|116486728|gb|EG529320.1|EG529320
genomic: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
EST: GGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGATGTEST: gi|125137507|gb|EL177362.1|EL177362
genomic: GGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
EST: CTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTEST: gi|116386137|gb|EG428729.1|EG428729
genomic: CTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
EST: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTEST: gi|124828874|gb|EH913710.1|EH913710
genomic: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
EST: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGEST: gi|125221163|gb|EL235248.1|EL235248
genomic: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGG
EST: CCAAGTGGAAATCTCCCCC-TGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATEST: gi|116386087|gb|EG428679.1|EG428679
genomic: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCAT
EST: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
genomic: CCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgtta ... gaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGT
cattgttctgtttcttgtttagatttttagtctgcctgcctttgagaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAA
ttgtttagattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgttgagggacttgtagccctgctaatttttatgtttttgtttcattgttctgtttcttgtttagatttttagtctgcctgcctttgagaaattgcagGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - -ctgctaa
- - - - - - - - - - - - - - - - - -gtttttg