1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaacttgagcttttaaccatgttcttgaactgtgtgattttgaactctttttgatggtcaagtctggataaatttgttactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAGAGTATCATTAGT
species | Arabidopsis thaliana |
transcript | AT1G02560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAG AGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGGEST: gi|124950257|gb|EL025734.1|EL025734
genomic: TCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAGgtgaaacttg ... tactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGG
EST: TTCCGTCTCCTCAAGGAGTTTGGTCCATTAG AGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAAGEST: gi|124993245|gb|EL065514.1|EL065514
genomic: TTCCGTCTCCTCAAGGAGTTTGGTCCATTAGgtgaaacttg ... tactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAA-G
EST: AATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAG AGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTAEST: gi|125048270|gb|EL120539.1|EL120539
genomic: AATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAGgtgaaacttg ... tactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTA
EST: AGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAG AGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGGEST: gi|125103668|gb|EL157991.1|EL157991
genomic: AGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAGgtgaaacttg ... tactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGG
EST: AATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAG AGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTEST: gi|125222004|gb|EL236089.1|EL236089
genomic: AATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAGgtgaaacttg ... tactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCT
EST: AATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAG AGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCT
genomic: AATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAGgtgaaacttg ... tactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCT
tgtgattttgaactctttttgatggtcaagtctggataaatttgttactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAGAGTATCATTAGT
ttttgat putative branch site (score: 4)
ttacttt putative PPT
ataaatttgttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaacttgagcttttaaccatgttcttgaactgtgtgattttgaactctttttgatggtcaagtctggataaatttgttactttgcagAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAGAGTATCATTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC