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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacataaatgtttccttatttagttgaagtagtaatcctaaacagtgtatgatcattttttgggttgaaacatgtcagGCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAG

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125290757|gb|EL304842.1|EL304842
EST:     CTGTTCTTGCTCAG                         GCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACC
genomic: CTGTTCTTGCTCAGgtaaaacata ... aacatgtcagGCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACC
EST: gi|86083727|gb|DR379486.1|DR379486
EST:     CGGAGACTCTGGAGCCTAGTCTACAGTTGGCAGCTGCTGTTCTTGCTCAG                         GCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACC
genomic: CGGAGACTCTGGAGCCTAGTCTACAGTTGGCAGCTGCTGTTCTTGCTCAGgtaaaacata ... aacatgtcagGCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagtagtaatcctaaacagtgtatgatcattttttgggttgaaacatgtcagGCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAG
            tcctaaa  putative branch site (score: 2)
                        tatgatcatttttt  TA-rich tract