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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagacctacctgatatagcaatatctcagcacctattctttgaatcaatcgcaaatttctcgagattttgatatgacccttgttctctttttcagTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACGCTTGGATGATGAACTCGACAATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTACGGGCA

Basic information

species Arabidopsis thaliana
transcript AT3G13870.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13870.2 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 18
gtatgagacctacctgatatagcaatatctcagcacctattctttgaatcaatcgcaaatttctcgagattttgatatgacccttgttc-tctttttcagTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACGCTTGGATGAT------GAACTCGACAATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTACGGGCA
|||||| |  ||  | | ||    | || |    ||||    ||  | |  ||   | |||    |||||     | | |||    ||  |  ||| |||| ||||||| |||||||||| |||||||| || ||||||||||||      ||  |  | ||||||||||| ||||| |   | ||  |     ||||        
gtatgacatataattaagat--tcacatattgttacctgagtttgtattacatttgagatta---gagatacctttttaaccaaatttaataatttacagTGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGCTTGGATGATGGTGATGACATTTATAATATTGAGAAAACATTAATAGTTGCATTAGCAGATTCAT------

upper sequence: AT3G13870.2 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 19
gtatgagacctacctgatatagcaatatctcagcacctattctttgaatcaatcgcaaatttctcgagattttgatatgacccttgttc-tctttttcagTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACGCTTGGATGATGAACTCGACA------ATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTACGGGCA
|||||| |  ||  | | ||    | || |||  ||||    ||  | |  ||   | ||||   |||||     | | |||    ||  |  ||| |||| ||||||| || ||||||| |||||||| || |||||||||||||     ||||      | || ||||| ||||| |   | ||  ||    ||||        
gtatgacatataattaagat--tcacatatcattacctgagtttgtattacatttgagattt---gagatacccttttaaccaaatttaataatttacagTGCTTGAAGTTGTTGTCTGTAATGGCTGTAATTCGCTTGGATGATGGTGATGACATTTATGACATCGAGAAAACATTAATAGTTGCATTGGCAGATTCAT------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatcaatcgcaaatttctcgagattttgatatgacccttgttctctttttcagTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACGCTTGGATGATGAACTCGACAATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTACGGGCA
                         ttttgat  putative branch site (score: 4)
                                    cccttgttctcttttt  putative PPT
                        attttgatat  TA-rich tract