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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccgacattttccagtgtcctaagtgacaagaagctctatatgtactagttagtgaagattaggtagtaatgcatatggataagaggacttttcttctttcatctacagCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCCGATAACAACCACATATCTTCATACCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G55750.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55750.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv19s0015g01390.t01 (Vitis vinifera), 3'ss of exon 16
gtaagtccgacattttccagtgtcctaagtgacaagaagctctatatgtactagttagtgaagattaggtagtaatgcatatggataagaggacttttc-ttctttcatctacagCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCCGATAACAACCACATATCTTCATACCAAG
                  | | || |   |      |   | || || |  |  ||  || |  || | |  | ||   |      |     ||       | | |  | | ||||||||||| ||||| ||||||||||||| |||||| ||||| || ||||| || ||||| ||||||||| |||| |||
--------------cattattatcattgttattttcatattttagatcttttcatttttggatttttg-ttttgatttttccaataatcttaaccaccggctgtcttgttttcagCATTGGACCTCAATTCAAGAATTACTGAGACATTTCTGGTCGTCATATCCAATTACAACTACATATCTTTATACTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagattaggtagtaatgcatatggataagaggacttttcttctttcatctacagCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCCGATAACAACCACATATCTTCATACCAAG
                                  cttttcttctttcatc  CT-rich tract
          tagtaat  TA-rich tract