Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtcatttcttttgatagctacatgatcatcattctaaccaactgaattgttatctaagagatgctgacttcttgcatttcctagGCATTAGTCAAGATGATTGCTGTCTGTGGGCCTTATCATAGAAATACTGCATGTGCGTACAGTCTTCTCGCAGTTGTACTATACCACACTGGCGATTTTA

Basic information

species Arabidopsis thaliana
transcript AT1G15290.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 15
----gtgtcatttcttttgatagctacatgat-catcat-tctaaccaactgaattgttatc----taagagatgctgac--ttcttgcatttcctagGCATTAGTCAAGATGATTGCTGTCTGTGGGCCTTATCATAGAAATACTGCATGTGCGTACAGTCTTCTCGCAGTTGTACTATACCACACTGGCGATTTTA
       | | ||   ||  |  ||||||| | |||||| |||||       | || | |       |     |  ||||  |  |  ||| |   |||||||||  |||||||| ||||| ||||| || |||||| ||||||||||| |||| || |||||||| || || || || ||||||||||| |||||||
gtacaaattactttcattagtctctacatggtgcatcatgtctaagtttactagttataaatgtggcacagtgttttgacaataatatcatattgcagGCATTAGCTAAGATGATGGCTGTTTGTGGACCCTATCATCGAAATACTGCAAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTA

upper sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA07G03250.1 (Glycine max), 3'ss of exon 17
----gtgtcatttcttttgatagctacatgat-catcattctaaccaactgaattgttatctaagagatgc-------tgac--ttcttgcatttcctagGCATTAGTCAAGATGATTGCTGTCTGTGGGCCTTATCATAGAAATACTGCATGTGCGTACAGTCTTCTCGCAGTTGTACTATACCACACTGGCGATTTTA
       ||| ||  ||   |  ||  ||| | |||||||   |  |  | | | |||||  | | |   |       ||||  | ||  ||| ||  |||||||||  |||||||| ||||| ||||| || | ||||  |||||||||| |||| || |||||||| || || || || ||||||||||| |||||||
gtacaaatcactttcttcagtctctggatggtgcatcatttcta--agtttactagttataaatgtggcacagtgttttgacaatactatcatatcgcagGCATTAGCTAAGATGATGGCTGTTTGTGGACCCTTTCATCAAAATACTGCAAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTA

upper sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 16
gtgtcatt-tcttttgatagctacatgatcatcattctaaccaactgaattgttatctaagaga------tgctgacttcttgcatttcctagGCATTAGTCAAGATGATTGCTGTCTGTGGGCCTTATCATAGAAATACTGCATGTGCGTACAGTCTTCTCGCAGTTGTACTATACCACACTGGCGATTTTA
||  ||   || ||  |||  ||    ||    |||||      || ||| |  ||  | |         |  ||  ||| |     |   ||||| | |  |||||||| ||||| ||||| || |||||| |||  |||||| |||| ||||||||||| |||||||| || ||||||||||| |||||||
gtaccaaaatcattcaatatgtattaaatgtgaattct--ttgtctaaatagaaattcatggatcctttttattgtattcctctcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCAAGTGCTTACAGTCTTCTAGCAGTTGTTCTTTACCACACTGGGGATTTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125308489|gb|EL322574.1|EL322574
EST:     GGAAAACTAGATGATGCTGTGAGCTATGGAACAAAG                         GCATTAGTCAAGATGATTGCTGT
genomic: GGAAAACTAGATGATGCTGTGAGCTATGGAACAAAGgtgtcatttc ... catttcctagGCATTAGTCAAGATGATTGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctaaccaactgaattgttatctaagagatgctgacttcttgcatttcctagGCATTAGTCAAGATGATTGCTGTCTGTGGGCCTTATCATAGAAATACTGCATGTGCGTACAGTCTTCTCGCAGTTGTACTATACCACACTGGCGATTTTA
                                      cttcttgcatttcct  CT-rich tract
               aattgttat  TA-rich tract