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gtaattttaattctacatatacacatgcgtacgtatattgaaacaggatttaatgtgaataaaatttcttaacaacattgttaatataaatatgtacctttttctagctaattatctcttcaaaattttgttaaatgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGA
species | Arabidopsis thaliana |
transcript | AT1G08930.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG TCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCEST: gi|125183962|gb|EL198916.1|EL198916
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTC
EST: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG TCGTTTGGCATTCTTCCAGAACTACACTCCCATCTTCACTTGCATCGGCEST: gi|124834452|gb|EH918891.1|EH918891
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACT-CACTCCCATCTTCACTTGCATCGGC
EST: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG TCGTTTGGCATTCTTCCAGAACTCACTEST: gi|124835485|gb|EH919924.1|EH919924
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACT
EST: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG TCGTTTGGCATTCTTCCAGAAEST: gi|125123414|gb|EL169863.1|EL169863
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAA
EST: CTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG TCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCEST: gi|124781912|gb|EH871855.1|EH871855
genomic: CTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTC
EST: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG TCGTTTGGCATTCTTCCAGAACTCACTCCCAT
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCAT
tatgtacctttttctagctaattatctcttcaaaattttgttaaatgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGA
agctaat putative branch site (score: 3)
taattatctcttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttaattctacatatacacatgcgtacgtatattgaaacaggatttaatgtgaataaaatttcttaacaacattgttaatataaatatgtacctttttctagctaattatctcttcaaaattttgttaaatgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA