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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 21
gtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAG-
                                                | || | | || ||||    ||       |  || ||| | || ||  |     ||| | ||  |  | |  | | | || || |||  ||   |  ||| ||||||||||||||||| | ||| || ||||||||||||||||| |||||||| ||| 
--------------------------------------------acgcagttaacccat-atgggtttacc----atttgca-attttttattttggagtgacatgaaaa--cttagtagt-atacttctttttggttggcatcttttacagaCAGATGATTTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGG

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 17
gtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAG
                                     || |   ||  |  | | | || ||||    ||     | |  || ||| |||  | ||    |  |||     |   |||         | || | |  || | |  ||| |||||||||||| |||| | ||| |||||||||||||||||||| |||||||| |||
------------------------------------atagtgtaca-cagctaacccat-atgggtttacc----gtttgca-attttcttatagacatgaaaatttagtagtttact---------tcttttgggttggtatcttttacagACAGATGATCTGCAAGATCATATAATTATTTGTGGATTTGGACGAGTTGGCCAG

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 13
gtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAG
                                               || ||   | || || ||  ||   | |  |   |  || | |  ||        ||    ||       |  |||  | ||||  ||   ||  |  ||| |||||||||||| ||||   |||||| || |||||||||||||| |||||||| |||
---------------------------------------------tgtagttagaccat-attgattca---gcatttgttatttttttttattagatttgacac-gtaaaattagttattgactactttt--tggaggacatcttttacagACAGATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 12
gtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAG
                                       | | | ||  || | |     ||||    ||    || | | || |  | |||||   ||  || |||      |   ||||     ||  | |||  ||||||| ||| ||||||||||||||||| | ||| || || |||||||||||||| || ||||| |||
---------------------------------------tgatggaaagatatgttctgtatggt-taacaccaagattatac-tggtgtagttactgatttcttta----atc--ttgat-----ttcctattgcatgattttgtttccagACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcagACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCAG
                                           ttttattt  CT-rich tract
                                        tgattttattt  TA-rich tract