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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatgatgaacaaacaaacataatttactaattactctgaccttgaaccactacagtgaaccataacgcttttggctatgcttttgctacacagGTTAAGCAACCAGGTCTAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGC

Basic information

species Arabidopsis thaliana
transcript AT5G40760.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40760.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA19G24250.1 (Glycine max), 3'ss of exon 13
gtaagtatatgatgaacaaacaaacataatt-tactaattactctgacc--ttgaaccactacagtgaaccataacgcttttggctatgcttttgctacacagGTTAAGCAACCAGGTCTAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGC
     || |  |||   |  ||||  ||  |  |  || | ||   |    || |   |      | |    | ||      |   |     ||   |  ||||| |||||||| || || || |||   || || |||||||| ||||||||||| ||||| |||||||||||||| ||  | || |||||||| || || |
---tataaagtatggctagtcaaagctatctgcataaaatgctaaaatgaattcagtgatatttctaagagttgactgacaagttcaatgccttatcatgcagGTCAAGCAACCTGGACTGGAGATGTCAACAGTTCAAAGTGAGCTAGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAAC

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA16G06850.3 (Glycine max), 3'ss of exon 13
gtaagtatatgatgaacaaacaaacataatttactaattactctgaccttgaaccactacagtgaaccataacgctttt----ggctatgcttttgctacacagGTTAAGCAACCAGGTCTAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGC
    ||  |  |||      ||||  || | | |  |  |  || |  || |  || |    |     |    |   |     |   |   | ||   |  ||||| |||||||| || || || |||  ||| || |||||||| || |||||||| ||||| |||||||||||||| ||  | || |||||||| || || |
---tgttaactatggctggtcaaagcta-tctgcatagaatgctaaaattaattcaatgatatttctaagggtgggctgacaagttcaatgtcttatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAAC

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 3'ss of exon 13
gtaagtatatgatgaacaaacaaacataatttactaattactctgaccttgaaccactacagtgaaccataacgcttttggctatgcttttgct-acacagGTTAAGCAACCAGGTCTAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGC
 | | | || |||   ||||  |   || |  |   || ||  || |   | |     |  || | |  | | |      |   |  |  | || |  ||||| ||||| || || || || |||   ||||| ||||| |||||||||||||| ||||| ||||| ||||||||  |  | || || ||||| || || |
-tcattttaggatcctcaaatgatattattacatgtataacattgcctcaggaatctgaaggttatcgtttatgtgcactgacgtattacttctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttgaaccactacagtgaaccataacgcttttggctatgcttttgctacacagGTTAAGCAACCAGGTCTAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGC
                     ccataac  putative branch site (score: 3)
                                         cttttgct  putative PPT