1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgggttcagttgatattttctgaccatagcgtgctctctctctctccagttccttaaacagtaaaaatcagtcatcatctcagcatctaattttgcgggcttgcagGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCTCTCAGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTG
species | Arabidopsis thaliana |
transcript | AT4G39080.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATG GTTCCAGTTCATTCCCCAAATGEST: gi|116415768|gb|EG458360.1|EG458360
genomic: ATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGgtgggttcag ... gggcttgcagGTTCCAGTTCATTCCCCAAATG
EST: ATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATG GTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCTEST: gi|124912370|gb|EH986450.1|EH986450
genomic: ATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGgtgggttcag ... gggcttgcagGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCT
EST: CTTCAAATCAAGTGTAAATATATG GTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTAEST: gi|124722950|gb|EH814352.1|EH814352
genomic: CTTCAAATCAAGTGTAAATATATGgtgggttcag ... gggcttgcagGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTA
EST: TAATGAGCTACTTTAATGCTAGATTCCTTCAAATCAAGTGTAAATATATG GTTCCAGTTCATTCCCCAAATGATAT
genomic: TAATGAGCTACTTTAATGCTAGATT-CTTCAAATCAAGTGTAAATATATGgtgggttcag ... gggcttgcagGTTCCAGTTCATTCCCCAAATGATAT
ccttaaacagtaaaaatcagtcatcatctcagcatctaattttgcgggcttgcagGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCTCTCAGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTG
atctaat putative branch site (score: 3)
atctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttcagttgatattttctgaccatagcgtgctctctctctctccagttccttaaacagtaaaaatcagtcatcatctcagcatctaattttgcgggcttgcagGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGCTATCTCTCAGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT