1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaaacacaactgaatttctccatttcttctctgttttgtgtgtatatttgtgctaattttttctatgttgtttgcttacttcaatcaaccagGGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCGACCAAAAAACAGAAGACAGTTTAAGTTATTTCGTTTAGCGTAAGTGTAA
species | Arabidopsis thaliana |
transcript | AT4G34910.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGAAACGGTCTAGAAAAGGCAGCGACCCACTCAAAACCTTCAACCCTAAT GGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCGEST: gi|164163455|gb|ES053083.1|ES053083
genomic: AGAAACGGTCTAGAAAAGGCAGCGACCCACTCAAAACCTTCAACCCTAATgtaaaacaca ... aatcaaccagGGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCG
EST: CGACCCACTCAAAACCTTCAACCCTAAT GGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCGEST: gi|19742073|gb|AU227426.1|AU227426
genomic: CGACCCACTCAAAACCTTCAACCCTAATgtaaaacaca ... aatcaaccagGGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCG
EST: AGAAACGGTCTAGAAAAGGCAGCGACCCACTCAAAACCTTCAACCCTAAT GGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCG
genomic: AGAAACGGTCTAGAAAAGGCAGCGACCCACTCAAAACCTTCAACCCTAATgtaaaacaca ... aatcaaccagGGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCG
gtgtgtatatttgtgctaattttttctatgttgtttgcttacttcaatcaaccagGGGTCTAAGAGAGGAGCCGTTGGCCAGAAGGATGGCAAAGATTCTAGCTCGACCAAAAAACAGAAGACAGTTTAAGTTATTTCGTTTAGCGTAAGTGTAA
tgcttac putative branch site (score: 2)
taattttttctatgtt TA-rich tract