1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaacaatcttaagcttctctctctcttttcataatttccggtttaagtttttgatatttgattctttaattcggtttatcttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGGTTAGATTTTTCAGAGATTTACTCGTTAATTAATAATGTTATGTTGGTTC
species | Arabidopsis thaliana |
transcript | AT1G54100.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTG TACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGGEST: gi|86080922|gb|DR376679.1|DR376679
genomic: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGgtaacaatct ... cttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGG
EST: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTG TACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGGEST: gi|116414405|gb|EG456997.1|EG456997
genomic: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGgtaacaatct ... cttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGG
EST: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTG TCCCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGGEST: gi|124915717|gb|EH989591.1|EH989591
genomic: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGgtaacaatct ... cttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGG
EST: TGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTG TACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAAEST: gi|222357912|gb|GH718553.1|GH718553
genomic: TGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGgtaacaatct ... cttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAA
EST: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTG TACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGG
genomic: CGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGgtaacaatct ... cttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGG
tttccggtttaagtttttgatatttgattctttaattcggtttatcttttgacagTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGGTTAGATTTTTCAGAGATTTACTCGTTAATTAATAATGTTATGTTGGTTC
ctttaat putative branch site (score: 4)
tttatctttt putative PPT
tttaagtttttgatat TA-rich tract