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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagaacataactacgtgtgtgatgtgaattctcttatttttttcatcttcttaatttctctacttctttcttcagGTTAAAAGCTCATTTTGAAGCTAATCCAAGAGACTTAGATCTGTTGAGACATGACAAGCCTCTGAGTAAGACTGCACCTGCACCACATCTAAAGGACATC

Basic information

species Arabidopsis thaliana
transcript AT4G34910.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087864|gb|DR383623.1|DR383623
EST:     CGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAA                         GTTAAAAGCTCATTTTGAAGCTAATCCAAGAGACTTAGATCTGTTGAGACA
genomic: CGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaaga ... ctttcttcagGTTAAAAGCTCATTTTGAAGCTAATCCAAGAGACTTAGATCTGTTGAGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtgaattctcttatttttttcatcttcttaatttctctacttctttcttcagGTTAAAAGCTCATTTTGAAGCTAATCCAAGAGACTTAGATCTGTTGAGACATGACAAGCCTCTGAGTAAGACTGCACCTGCACCACATCTAAAGGACATC
                            tcttaat  putative branch site (score: 3)
        ttctcttatttttttc  CT-rich tract
             ttatttttttcatctt  TA-rich tract