Sequence
atgc intronic sequence ATGC exonic sequencegtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttttatctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G47510.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 3'ss of exon 11
gtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttt---tatctctttct--cagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
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gtaagactgta-ttgcatttgattgtttcagtttctcaattagcact-gtgctatcaagcattggttttaactacttccatcttacagGGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAG
upper sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 11
gtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaat----gaatttttatctc--------tttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
||| | | | | | | | | | || ||| | || | | || | || | | || || ||||||||| || ||||| || ||||||||||| |||| |||||||||||||||
gtaagcagactgttattatatcatgatatggtttttgtatgttgatcaacggaagacagcattgtgaagcttctgtttcaacttgtacttttcagGGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAG
upper sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA02G01920.1 (Glycine max), 3'ss of exon 11
------------------------------------------------gtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagt--tttgattcaaatgaatttttat-ctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
|| | || | | | | | || | | ||| | || || | | ||||| || || | | | ||| | |||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| |||
gtaagatcctcatgctgactgaatataaatttgttacacaaaccagctgttttcttgtcacttgctatagttcattaatttatttgtcttgcaattggaatttgactctaagccacaactgtattctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
upper sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 11
------------------------------------------------gtatgaatgcaatcttcctttgctcttctgtcct-tttctttttcact---agttttgattcaaatgaatttttatctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
|| | | ||| || | | ||| | ||| | || || | | ||| | || | | ||| ||| | |||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| |||
gtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtat-tctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
upper sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 11
--------------------gtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttttatctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
|| | || | | || | ||| | || | || | |||| | || | | ||| | |||||||||||| || || || ||||||||||| ||||| ||||| |||||||||
accaatcatttatatttttactagggataagttagacaacaccttctatgtgccttacaattgga---gtttgactctaagccacaaccttattctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
upper sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------gtatgaatgcaatcttcctttg-ctcttctgtccttttctttttcactagttttga--ttcaaatgaatttttatctctttctc-agGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
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gtgagttctttacctaaaaccattcttttttgttcatttctaatttcctgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgagGGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124991783|gb|EL064052.1|EL064052EST: TTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCT GGGAAGGTGAATCCTACACAGTGTGAGGCC
genomic: TTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgc ... tctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtccttttctttttcactagttttgattcaaatgaatttttatctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG
ttttgat putative branch site (score: 4)
tttttatctctttctc putative PPT
ttttgattcaaatgaa TA-rich tract