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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgaaaagattcatatcttcactatattcatagtttttgtacttaaatcttagatttcagtaatccctaatggtttcatttcctcactccagGTTTGGCTATAGGAGTGTTGAATCTCGCAATCGTTATTCCCCAG

Basic information

species Arabidopsis thaliana
transcript AT2G02860.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124745594|gb|EH836406.1|EH836406
EST:     CCCTTTCTCTGTCACAGCAGAAGTCACTGCTGATTCCGGTGGCGGTCAAG                         GTTTGGCTATAAGGAGTGTTGAATCTCGCAATCGTTATTCCCC
genomic: CCCTTTCTCTGTCACAGCAGAAGTCACTGCTGATTCCGGTGGCGGTCAAGgtctgtgaaa ... ctcactccagGTTTGGCTATA-GGAGTGTTGAATCTCGCAATCGTTATTCCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacttaaatcttagatttcagtaatccctaatggtttcatttcctcactccagGTTTGGCTATAGGAGTGTTGAATCTCGCAATCGTTATTCCCCAG
                                           tcctcac  putative branch site (score: 2)
                                    tttcatttcctcactc  CT-rich tract
     ttaaatcttagattt  TA-rich tract