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gtaaattttcaataataagaagaaaaatatactttaaattcactaaagaaattccaatatgaaaattgaaaaaaattatttgactatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATG
species | Arabidopsis thaliana |
transcript | AT1G08930.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCAACAATTATG GTTCCAAAAGCAATGCTGEST: gi|124984782|gb|EL057415.1|EL057415
genomic: GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCA-CAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTG
EST: AGGAGGATTTCCAAGTGCTATTGGCACAGTCCGTAATAGCCACAATTATG GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAG-AGAEST: gi|125276996|gb|EL291081.1|EL291081
genomic: AGGAGGATTTCCAAGTGCTATTGGCACA-TCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
EST: AAGGAGGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAEST: gi|124905191|gb|EH979271.1|EH979271
genomic: AAGGAGGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
EST: GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG GTACCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAEST: gi|124729306|gb|EH820708.1|EH820708
genomic: GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAA
EST: TCCGTAATAGCCACAATTATG GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAEST: gi|164113043|gb|ES099765.1|ES099765
genomic: TCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
EST: ACATCCGTAATAGCCACAATTATG GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAG
genomic: ACATCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAG
ttcactaaagaaattccaatatgaaaattgaaaaaaattatttgactatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATG
taaagaaattccaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattttcaataataagaagaaaaatatactttaaattcactaaagaaattccaatatgaaaattgaaaaaaattatttgactatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA