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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctaggattgaataagtttctcattacgtgtttgaaagatatttttcttgaagaatgtaaacttatatagttctatggttaccactatcctagttatatgtgtttcaattgttatttttcttcgagttctaataaatacaagctttgaagcatccaaacgttttcattttttactttcttattgcagCTTATTAAGCTAAACCTGCAACCGGATGCAAAAGGGTCATATGTAGAAATTTTAGAAAAGTATGTCAACTTGGGGCCTATTGTCGATTTTTGTGTAGTTG

Basic information

species Arabidopsis thaliana
transcript AT4G21100.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21100.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 11
gtacgctaggattgaataagtttctcattacgtgtttgaaagatatttttcttgaagaatgtaaacttatatagttctatggttaccactatcctagttatatgtgtttcaattgttatttttcttcgagttctaataaatacaagctttgaagcatccaaacgttttcattttttactttcttattgcagCTTATTAAGCTAAACCTGCAACCGGATGCAAAAGGGTCATATGTAGAAATTTTAGAAAAGTATGTCAACTTGGGGCCTATTGTCGATTTTTGTGTAGTTG
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----------------------------------------------------------------------------------------ttaaagactttggaagtgtagtatggcatatccatagctgaatacttatgcttacatattcagacataac---atattgacaatctctgatggtaaaatgcagCTAATAAAACTAAATCTACAGCCTGATGCAAAAGGTTCTTATGTGGAAGTATTGGAAAGGTATGTCAATTTGGGGCCTATTGTTGACTTCTGTGTGGTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatacaagctttgaagcatccaaacgttttcattttttactttcttattgcagCTTATTAAGCTAAACCTGCAACCGGATGCAAAAGGGTCATATGTAGAAATTTTAGAAAAGTATGTCAACTTGGGGCCTATTGTCGATTTTTGTGTAGTTG
                            ttttcattttttactt  CT-rich tract
                            ttttcattttttactt  TA-rich tract