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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctcttttaatatggacttgttgttatggtttttggatttcttgctgaatctttttataatagtaactggaactcactttgatctgtgttgttgcagGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATG

Basic information

species Arabidopsis thaliana
transcript AT4G15900.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G15900.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv05s0077g02310.t01 (Vitis vinifera), 3'ss of exon 11
--gtaagtctcttttaatatggacttgttgttatggtttttggatttcttgctgaatctttttataatagtaactggaactcactttgatctgtgttgttgcagGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATG
   |     || | | || | | ||| |    |  | |     |||    ||  |   |   | | ||  | | |  |  | ||  || ||||| |  || ||||| ||||||||||| || || ||||| ||||| |||||||| || ||||||||| ||||||
ggattctattcctcttatgtag-cttatgcacaaagat---acattgtaagcatagaatcccttttattatgatttaacttaaccatggtctgtatgcttccagGATCCACAAGTTGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125130779|gb|EL173785.1|EL173785
EST:     CACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACA                         GAACCCACGAGTTGTCACCGGATCCCATGACA
genomic: CACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACAgtaagtctct ... gttgttgcagGA-CCCACAAGTTGTCACCGGATCCCATGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgaatctttttataatagtaactggaactcactttgatctgtgttgttgcagGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATG
     aatctttttataatag  TA-rich tract