Sequence
atgc intronic sequence ATGC exonic sequencegtaataactcttaatcagaagtcctgatctctacgttttctttctattctgtttgccaatttatgacatatgctgagagtttgagtgcggcttgtataatttctctctgggcatcctgtctcagGTCATGAAAGGCTTTGAACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G53090.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G53090.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA03G34650.1 (Glycine max), 3'ss of exon 12
gtaataactcttaatcagaagtcctgatctctacgttttctttctattctgtttgccaatttatgacatatgctgagagtttgagtgcggcttgtataatttctctctgggcatcctgtctcagGTCATGAAAGGCTTTGAACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAA
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----------------------cctggtgaattatatttgaagagtttatgcatgcta-tttgtg-cagatgccaattttaagatatctattttcattttctgctttcttccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAC
upper sequence: AT3G53090.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA19G37310.3 (Glycine max), 3'ss of exon 13
gtaataactcttaatcagaagtcctgatctctacgttttctttctattctgtttgccaatttatgacatatgctgagagtttgagtgcggcttgtataatttct-ctctgggcatcctgtct-cagGTCATGAAAGGCTTTGAACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAA
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---------------------gcctcatgagt-tatattgaagagttcatgcatgcta-tttgtg-cagatgccaat--tttaagatatctatgtttattttctgctttctgccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125215877|gb|EL229960.1|EL229960EST: ACACTGGTGGTTACAGTGATAGCAGTCGAACAATCAAAATCTTCTGGGAG GTCATGAAAGGCTTTGAACCGAGTGA
genomic: ACACTGGTGGTTACAGTGATAGCAGTCGAACAATCAAAATCTTCTGGGAGgtaataactc ... cctgtctcagGTCATGAAAGGCTTTGAACCGAGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgctgagagtttgagtgcggcttgtataatttctctctgggcatcctgtctcagGTCATGAAAGGCTTTGAACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAA
tcctgtctc CT-rich tract
ttgtataattt TA-rich tract