1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaagaacatggctaaattcaactcttgagaaaacttttgtctagctggtttgttgttgattctcaaatcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAGCACCCGGAAAAGATC
species | Arabidopsis thaliana |
transcript | AT3G04870.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAAAGTAGCGATGCAG GTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCGEST: gi|86077676|gb|DR373433.1|DR373433
genomic: TAGAGAAAGTAGCGATGCAGgtaaagaaca ... tcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCG
EST: CGTATATGCGAATGCCAAATGATAAGATCATAGAGAAAGTAGCGATGCAG GTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCGEST: gi|125316838|gb|EL330923.1|EL330923
genomic: CGTATATGCGAATGCCAAATGATAAGATCATAGAGAAAGTAGCGATGCAGgtaaagaaca ... tcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCG
EST: CGTATATGCGAATGCCAAATGATAAGATCATAGAGAAAGTAGCGATGCAG GTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCA
genomic: CGTATATGCGAATGCCAAATGATAAGATCATAGAGAAAGTAGCGATGCAGgtaaagaaca ... tcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCA
tcttgagaaaacttttgtctagctggtttgttgttgattctcaaatcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAGCACCCGGAAAAGATC
tgttgat putative branch site (score: 4)
tcttgttc putative PPT
aaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaacatggctaaattcaactcttgagaaaacttttgtctagctggtttgttgttgattctcaaatcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTGGTCGTCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAGCACCCGGAAAAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC