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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgtgttagcttcattactccattaaatactacttgcttactcggatatatggacatggagttataagttatatccttaatagATGGTCCACCAACAACATAGACGACTTCCAGACGATTTGGATTACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G13440.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13440.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA08G00380.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------------gtatcttgtgttagcttcattactccattaaatactacttgcttactcggatatatg---gacatggagttataa----gttatatcctta---atagATGGTCCACCAACAACATAGACGACTTCCAGACGATTTGGATTACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAG
                                                             | | |   | |  || |||  | ||     ||  | ||   |  || | | | |     || || | |   |     || ||    |||   |||| ||||     |||||||||||| |||||| || || |||||||||||| | ||||||||  | || | |||||  || ||||||||||| |||
gtatttgttacactttgtcaatgagaaaaagtgaatctgtttttgctgtgtcaacatgacaaccctaaatcattttaatttttacacattttagcatttcagttttcagctgtgtatttaacgtgaaatctcattgttgtgatggatttacctatagCTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084836|gb|DR380595.1|DR380595
EST:     ATATAAMATATGAAGGTTTCATTGTTCGCCAGCAAAACCAAATGCAGCAG                         ATGGTCCACCAACAACATAGACGACTTCCAGACAATTTGGATTACTATTCG
genomic: ATATAAAATATGAAGGTTTCATTGTTCGCCAGCAAAACCAACTGCAGCAGgtatcttgtg ... tccttaatagATGGTCCACCAACAACATAGACGACTTCCAGACGATTTGGATTACTATTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actacttgcttactcggatatatggacatggagttataagttatatccttaatagATGGTCCACCAACAACATAGACGACTTCCAGACGATTTGGATTACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAG
      tgcttac  putative branch site (score: 2)
                                           tatcctt  putative PPT
                                 ttataagttatatcct  TA-rich tract